Multi-omics data integration, interpretation, and its application

I Subramanian, S Verma, S Kumar… - … and biology insights, 2020 - journals.sagepub.com
… the tools and methods that adopt integrative approach to analyze … This method uses a
Bayesian nonparametric model (… of integrative approach that helps in advancement of treatment

Overall survival prediction of non-small cell lung cancer by integrating microarray and clinical data with deep learning

YH Lai, WN Chen, TC Hsu, C Lin, Y Tsao, S Wu - Scientific reports, 2020 - nature.com
… from the integrative DNN. We also demonstrated … prognostic performance for survival
analysis. This highlights the benefit of integrating microarray and clinical data via our integrative

[PDF][PDF] A comprehensive understanding of ovarian carcinoma survival prognosis by novel biomarkers.

Y Wang, L Lei, YG Chi, LB Liu… - European Review for …, 2019 - europeanreview.org
… with a non-parametric bootstrapping procedure using survival … We took an integrated
approach to capture a complete … prognosis was found, although in another microarray analysis it …

[HTML][HTML] Computational advances of tumor marker selection and sample classification in cancer proteomics

J Tang, Y Wang, Y Luo, J Fu, Y Zhang, Y Li… - Computational and …, 2020 - Elsevier
… for the treatment of oncologic diseases. To facilitate cancer … non-parametric methods
Clin Cancer Res. 18:3677–85, 2012 … of Microarrays SAM samr (sam) The SAM is non-parametric

Multi-omics data integration approaches for precision oncology

R Correa-Aguila, N Alonso-Pupo… - Molecular …, 2022 - pubs.rsc.org
… -making process in the diagnosis and clinical management of … This technique has been
successfully applied to microarray … Kernel methods are powerful nonparametric modeling tools …

[HTML][HTML] Microarray cancer feature selection: Review, challenges and research directions

MA Hambali, TO Oladele, KS Adewole - International Journal of Cognitive …, 2020 - Elsevier
… such as diseases prediction and diagnosis, cancer study and … a comprehensive survey
of studies on microarray cancer … actually survey the comprehensive approaches employed. …

Bayesian data integration and variable selection for pan-cancer survival prediction using protein expression data

AK Maity, A Bhattacharya, BK Mallick… - …, 2020 - academic.oup.com
… The proposed methods have been used to analyze data from the … protein arrays–based
high-quality protein expression data as well as detailed clinical annotation, including survival

Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery

P Paci, G Fiscon, F Conte, RS Wang, L Farina… - NPJ systems biology …, 2021 - nature.com
… may support rational, personalized planning of disease prevention or treatment. … microarray
gene expression profiling of lung or airway tissue from subjects with COPD obtained using

Identification of sero-diagnostic antigens for the early diagnosis of Johne's disease using MAP protein microarrays

L Li, JP Bannantine, JJ Campo, A Randall, YT Grohn… - Scientific reports, 2019 - nature.com
… The antibody breadth score is the count of reactive antigens and they were compared using
Poisson regression. Statistical analyses, both parametric and non-parametric tests, were …

Autoantibody signatures discovered by HuProt protein microarray to enhance the diagnosis of lung cancer

Y Wang, J Li, X Zhang, M Liu, L Ji, T Yang, K Wang… - Clinical …, 2023 - Elsevier
… by means of protein microarray and their serum level … protein microarray is an efficient
approach in discovering novel TAAbs which could be used as biomarkers in lung cancer diagnosis